Events
Single Cell Summer Workshop
The first yearly workshop for single cell genomics data analysis occured September 26 - 28, 2022. The workshop focused on the introduction to single cell data analysis. The in-person Single Cell Omics Data Workshop required an application and covered the use of different single cell analysis tools for single cell DNA, RNA and Epigenetic analysis. The in-person workshop was capped at 30 people.
Yearly workshops are planned and will occur at the end of the summer beginning of the fall term. Updated requirements will be posted here and emailed out the Gulf Coast Consortium mailing list when the workshop applications open each year. General application requires are listed below. Examine of topic and flyer are on the side.
Applicant Eligibility: Applications are open to students, postdocs, fellows, staff, principal investigators, and others. Trainees (student, postdocs, fellows) at GCC (Gulf Coast Consortium) Institutions will be given preference. Beginners are welcome. However, they should complete an R programming online course first and basic unix/linux experience is strongly suggested.
If you have any questions, please email: Anna K. Casasent.
This workshop is currently supported by our Grant CPRIT Core grant RP180684 and the Gulf Coast Consortium Single Cell Omics Group.
TXSC Weekly Seminar Series
The core organizes a weekly seminar series on Fridays from 4-5 p.m. at MD Anderson that focuses on research related to single cell genomics. The seminar series is open to all researchers in the Texas Medical Center (TMC) and includes attendees and speakers from Baylor, University of Houston, Texas A&M, Methodist and Texas Children’s Hospital.
If you are interested in giving a talk or recieving invites at the TXSC seminar please contact Anna K. Casasent.
Gulf Coast Consortium (GCC) for Single Cell Omics
The GCC is a cluster of researchers across the TMC institutes that are interested in developing and applying single cell sequencing technologies for research applications. The GCC organizes a yearly single cell symposium, networking activities and has regular meetings with members across the TMC. The GCC is chaired by Rui Chen (Baylor), Nicholas Navin (MD Anderson) and Luay Nakhleh (Rice University). For more information, please visit the GCC Single Cell Omics website.
User Grant Winners
2022
Oscar Villarreal from Scott Kopetz Lab in the Department of Gastrointestinal Medical Oncology
Rui Ye from Steven Lin Lab in the Department of Radiation Oncology & Nick Navin Lab in the Department of System Biology
Zeyu Jin from Jihye Yun Lab in the Department of Genetics
Chibawanye Ene from the Department of Neurosurgery
Li Cai from Ronald DePinho Lab in the Department of Cancer Biology
2021
Wen-Hao Hsu from Ronald DePinho Lab in the Department of Cancer Biology
Tin Chanh from Pham from Georgios I Karras in the Department of Genetics
Yiyun Lin from Nick Navin Lab in the Department of Genetics
Yuehui Zhao from Nick Navin Lab in the Department of Genetics
Carl Michael Gay from the Department of Thoracic Head & Neck Medical Oncology
Elshad Hasanov from the Cancer Medicine Fellowship Program
Jovanka Gencel-Augusto from Gigi Lozano Lab in the Department of Genetics
Cullen Taniguchi from the Department of Gastrointestinal Radiation Oncology
Kalie Wang from Nick Navin Lab in the Department of Genetics
Sofia Mastoraki from Khandan Keypmarsi in the Department of Experimental Radiation Oncology
2020
Pravesh Gupta from Krishna Bhat Lab in the Department of Translational Molecular Pathology
Dali Li from Funda Meric-Berstam Lab in the Department of Investigational Cancer Therapeutics
Yohei Yoshihama from Ronald DePinho Lab in the Department of Cancer Biology
Dhiraj Kumar from Filippo Giancotti Lab in the Department of Cancer Biology
Ruli Gao from Stephen Lai Lab from the Department of Head and Neck Surgery & Nick Navin Lab in the Department of Genetics
Sofia Mastoraki from Khandan Keypmarsi in the Department of Experimental Radiation Oncology
Rui Ye from Steven Lin Lab in the Department of Radiation Oncology & Nick Navin Lab in the Department of Genetics
Erika Yanil Faraoni from Micheal Kim Lab in the Department of Surgical Oncology
Xiaoping Wang from Naoto Ueno Lab in the Department of Breast Medical Oncology