|
![3D"NCBI](3D"http://www.ncbi.nlm.nih.gov/geo/img/ncbi_logo.gif"){kind=logo}
![3D"GEO](3D"http://www.ncbi.nlm.nih.gov/geo/img/geo_main.gif")
![3D""=20](3D"http://www.ncbi.nlm.nih.gov/coreweb/template1/pix/top_right.gif"=20)
![3D""=20](3D"http://www.ncbi.nlm.nih.gov/coreweb/template1/pix/top2_left.gif"=20)
![3D""=20](3D"http://www.ncbi.nlm.nih.gov/coreweb/template1/pix/top2_right.gif")
![3D""=20](3D"http://www.ncbi.nlm.nih.gov/coreweb/template1/pix/main_left_bg.gif=)
![3D""=20](3D"http://www.ncbi.nlm.nih.gov/coreweb/template1/pix/pixel.gif"=20){kind=tracking}
![3D""=20](3D"http://www.ncbi.nlm.nih.gov/coreweb/template1/pix/but_right.gif"=20)
|
| |
"+sText;else=0A= obj.innerHTML+=3DsText;}},selectRange:function(oObj,iStart,iLength){if(!(= oObj&&oObj.value))return;if(oObj.createTextRange){var = oRange=3DoObj.createTextRange();oRange.moveStart("character",iStart);oRan= ge.moveEnd("character",iLength-oObj.value.length);oRange.select();}else = if(oObj.setSelectionRange){oObj.setSelectionRange(iStart,iLength);}=0A= oObj.focus();},getSelection:function(){var = text=3D"";if(window.getSelection){text+=3Dwindow.getSelection();}else = if(document.getSelection){text+=3Ddocument.getSelection();}else = if(document.selection){text+=3Ddocument.selection.createRange().text;}=0A= return text;},getPlural:function = x_Plural(iN,sSuffix){if(undefined=3D=3DsSuffix){return(iN>1?"s":"");}else= = if("y"=3D=3DsSuffix){return(iN>1?"ies":"");}else{return(iN>1?sSuffix+"s":= sSuffix);}},getPeriodToString:function(iDelta){var x=3D"Error, cannot = convert '"+iDelta+"'";var = sDir;iDelta=3DparseInt(iDelta);if(iDelta<0){sDir=3D" = before";iDelta=3D-iDelta;}else=0A= sDir=3D" ago";var iS=3DparseInt(iDelta/1000);var = iM,iH,iD;if(iS<60){x=3DiS+" = second"+this.getPlural(iS);}else{iM=3DparseInt(iS/60);if(iM<60){x=3DiM+" = minute"+this.getPlural(iM);}else{iH=3DparseInt(iM/60);if(iH<24){iM=3DiM-i= H*60;x=3DiH+" hour"+this.getPlural(iH)+" and "+iM+" = minute"+this.getPlural(iM);}else{iD=3DparseInt(iH/24);iH-=3DiD*24;x=3DiD+= " day"+this.getPlural(iD)+" and "+iH+" hour"+this.getPlural(iH);}}}=0A= return x+sDir;},isEmail:function(s){var = filter=3D/^([\w-]+(?:\.[\w-]+)*)@((?:[\w-]+\.)*\w[\w-]{0,66})\.([a-z]{2,6= }(?:\.[a-z]{2})?)$/i;return(filter.test(s))},addEvent_guid:1,addEvent:fun= ction(element,type,handler){if(!handler.$$guid)handler.$$guid=3Dthis.addE= vent_guid++;if(!element.events)element.events=3D{};var = handlers=3Delement.events[type];if(!handlers){handlers=3Delement.events[t= ype]=3D{};if(element["on"+type]){handlers[0]=3Delement["on"+type];}}=0A= handlers[handler.$$guid]=3Dhandler;element["on"+type]=3DhandleEvent;funct= ion handleEvent(event){var = returnValue=3Dtrue;event=3Devent||fixEvent(window.event);var = handlers=3Dthis.events[event.type];for(var i in = handlers){this.$$handleEvent=3Dhandlers[i];if(this.$$handleEvent(event)=3D= =3D=3Dfalse){returnValue=3Dfalse;}}=0A= return returnValue;};function = fixEvent(event){event.preventDefault=3DfixEvent.preventDefault;event.stop= Propagation=3DfixEvent.stopPropagation;return = event;};fixEvent.preventDefault=3Dfunction(){this.returnValue=3Dfalse;};f= ixEvent.stopPropagation=3Dfunction(){this.cancelBubble=3Dtrue;};return = handler.$$guid;},removeEvent:function(element,type,handler){if(element.ev= ents&&element.events[type]){delete = element.events[type][handler.$$guid];return handler.$$guid;}=0A= return = null;},preventDefault:function(e){if(e.preventDefault)e.preventDefault();= else = window.event.returnValue=3Dfalse;},getRelatedTarget:function(e){if(!e)var= e=3Dwindow.event;if(e.relatedTarget)return e.relatedTarget;else = if(e.toElement)return e.toElement;else if(e.fromElement)return = e.fromElement;},getTargetObj:function(eEvent){var oTarget;var = e=3DeEvent||window.event;if(e=3D=3Dnull)return = null;if(e.srcElement=3D=3Dnull)oTarget=3De.target;else = oTarget=3De.srcElement;while(oTarget&&oTarget.nodeType!=3D1)oTarget=3DoTa= rget.parentNode;return oTarget;},printObj:function(oObj,iLevel){var = s=3D"";var sIdent=3D"";if(!iLevel)iLevel=3D0;for(var = i=3D0;i
"=0A=
RPopUpWindow_text+=3D"
|
| "+RPopUpWindow_thetext+"<= /td> |
| "+RPopUpWindow_thetext+"<= /td> |
| "+RPopUpWindow_thetext+" |
CAUTION: data are extracted directly from the = original records with no consideration as to whether the values are = directly comparable."=0A= var geoaxema_pubmed =3D "Enter one or more PubMed ID(s). Separate = multiple entries with comma."=0A= =0A= var geodesli_softtext =3D "Select this if you are uploading a file in = SOFT format. If supplementary files are part of your = submission, zip or tar them together with your SOFT file. Do not include = any sub-directories or sub-folders in the zip or tar archive."=0A= var geodesli_geoarchive =3D "Select this if you are uploading a file in = GEOarchive format. All spreadsheets and raw data files = should be zipped or tarred together"=0A= var geodesli_softmatrix =3D "Select this if you are uploading a file in = SOFTmatrix spreadsheet format. If supplementary files = are part of your submission, zip or tar them together with your = spreadsheet file."=0A= var geodesli_miniml =3D "Select this if you are uploading a file in = MINiML format. If external and/or supplementary files = are part of your submission, zip or tar them together with your MINiML = file. Do not include any sub-directories or sub-folders in the zip or = tar archive."=0A= var geodesli_other =3D "Select this if you are uploading updates or = files requested by the GEO staff"=0A= var geodesli_browsefile =3D "Type in the location of the file you are = uploading on your machine or use the Browse button to = select the file"=0A= var geodesli_nextupload =3D "Click Next to upload the = file and proceed to the next screen. If you experience browser timeouts = during the file upload, please contact GEO staff at geo@ncbi.nlm.nih.gov = for assistance."=0A= var geodesli_holddate =3D "Enter a hold until date. A minimum hold of 2 = days will be applied to any submission that has not yet been approved by = the GEO staff."=0A= var geodesli_maxerrors =3D "Enter maximum amount of reported errors in = case your file has any."=0A= var geodesli_neworupdate =3D "Choose whether you are making an entirely = new submission or updating an existing one."=0A= var geodesli_actsubmit =3D "Choose whether you want to submit the file = or just check its validity"=0A= var geodesli_clientfilename =3D "This tell you the local path to the = file you have just uploaded"=0A= var geodesli_upduseexistdate =3D "Do not change the release date for the = object that you are updating"=0A= var geodesli_releaseimmeddate =3D "Release as soon as possible (subject = to GEO curators approval)"=0A= var geodesli_comment =3D "Enter an optional comment here, the GEO staff = person who processes your submission will see this comment"=0A= var geodesli_submitnext =3D "Click here to make another submission using = direct deposit"=0A= =0A= var geosubri_selectsoftfile =3D "Select the SOFT-formatted file; do not = select any of the supplementary files. If you have created the SOFT file = correctly, the supplementary files will be included automatically"=0A= var geosubri_selectminimlfile =3D "Select the MINiML-formatted file; do = not select any of the supplementary files. If you have created the = MINiML file correctly, the supplementary files will be included = automatically"=0A= =0A= var geosesu_title =3D "Provide a unique title that describes the overall = study (maximum 120 characters)"=0A= var geosesu_pmid =3D "Specify a valid PubMed identifier (PMID) that = references a published article describing this study. Multiple PMIDs can = be added using a comma separator, e.g. 12345678, 12345679"=0A= var geosesu_url =3D "Specify a Web link that directs users to = supplementary information about the study"=0A= var geosesu_descr =3D "Summarize the goals and objectives of this study. = The abstract from the associated publication may be suitable. You can = include as much text as you need to thoroughly describe the study"=0A= var geosesu_overalldesign =3D "Provide a brief description of the = experimental design. Indicate how many samples are analyzed, if = replicates are included, are there control and/or reference samples, = dye-swaps, etc.. You can include as much text as you need to thoroughly = describe the experimental design"=0A= var geosesu_seriestype =3D "Enter keyword(s) that generally describe the = type of study. Examples include: time course, dose response, comparative = genomic hybridization, ChIP-chip, cell type comparison, disease state = analysis, stress response, genetic modification, etc."=0A= var geosesu_listcontribs =3D "List contributors associated with this = study"=0A= =0A= =0A= var geowesu_specifysmtitle =3D "Provide a unique title that describes = this sample (maximum 120 characters). We suggest that you use the system = [biomaterial]_[condition(s)]_[replicate number], e.g. = \'Muscle_exercised_60min_rep2.\'"=0A= var geowesu_specifypltitle =3D "Provide a unique title that describes = your array (maximum 120 characters). We suggest that you use the system = [institution/lab]_[species]_[number of features]_[version], e.g. = \'FHCRC_Mouse_15K_v1.0\'"=0A= var geowesu_datareleasedate =3D "Specify the date on which data can be = released to the public. This submission can be held private for up to = three years from today (the date can be extended later should the need = arise). All submissions are kept private until reviewed/approved by a = GEO curator (usually within 2 days)"=0A= var geowesu_sampletagcount =3D "Specify the total number of tags = extracted from library. A whole, non-zero number is required. The = reciprocal of this number is used for SAGE library normalization."=0A= var geowesu_hybrprotocol =3D "Describe the protocols used for = hybridization, blocking and washing, and any post-processing steps such = as staining. You can include as much text as you need to thoroughly = describe the protocol"=0A= var geowesu_scanprotocol =3D "Describe the scanning and image = acquisition protocols, hardware, and software. You can include as much = text as you need to thoroughly describe the protocol"=0A= var geowesu_selectorgs_pl =3D "Identify the organism(s) from which the = elements on the array were designed or derived. Multiple organisms can = be specified by holding down the Ctrl key during selection."=0A= var geowesu_specotherorgs_pl =3D "Use this box if one or more of the = array organisms are missing from the above list. Text is required if = OTHER was selected from the menu above. Multiple organism names should = be separated with a comma"=0A= var geowesu_manufacturer =3D "Provide the name of the company, facility = or laboratory where the array was manufactured or produced"=0A= var geowesu_manuprotocol =3D "Describe the array manufacture protocol. = Include as much detail as possible, e.g., clone/primer set = identification and preparation, spotting protocols. You can include as = much text as you need to thoroughly describe the protocol"=0A= var geowesu_catalognumber =3D "Provide the manufacturer catalog number = for commercially-available arrays"=0A= var geowesu_platformsupport =3D "Choose the surface type of the array"=0A= var geowesu_coating =3D "Choose the coating on the array"=0A= var geowesu_addsampleinfo =3D "Include any additional information not = provided in the other fields, or paste in broad descriptions that cannot = be easily dissected into the other fields"=0A= var geowesu_addinfo =3D "Provide any additional descriptive information = not captured in another field, e.g., array and/or feature physical = dimensions, element grid system"=0A= var geowesu_dataprocessing =3D "Provide details of how data in the VALUE = column of your table were generated and calculated, i.e. normalization = method, data selection procedures and parameters, transformation = algorithm (e.g. MAS5.0). You can include as much text as you need to = thoroughly describe the procedures"=0A= var geowesu_url =3D "Specify a Web link that directs users to = supplementary information about the array"=0A= var geowesu_pmid =3D "Specify a valid PubMed identifier (PMID) that = references a published article that describes the array. Multiple PMIDs = can be added using a comma separator, e.g. 12345678, 12345679"=0A= var geowesu_listcontribs =3D "List contributors associated with this = array design"=0A= var geowesu_namingsource =3D "Briefly identify the biological material = and the experimental variable(s), e.g. \'vastus lateralis muscle, = exercised, 60 min.\'"=0A= var geowesu_selectorgs_sm =3D "Identify the organism(s) from which the = biological material was derived. Multiple organisms can be specified by = holding down the Ctrl key during selection"=0A= var geowesu_specotherorgs_sm =3D "Use this box if one or more of the = biological material organisms are missing from the above list. Text is = required if OTHER was selected from the menu above. Multiple organism = names should be separated with a comma"=0A= var geowesu_samplecharacteristics =3D "List all available = characteristics of the biological source e.g., \'Strain: C57BL/6\', = \'Gender: female\', \'Age: 45 days\', \'Tissue:bladder tumor\', \'Tumor = stage: Ta\'. You can include as much text as you need to thoroughly = describe the biological material"=0A= var geowesu_provider =3D "Specify the name of the company, laboratory or = person that provided the biological material"=0A= var geowesu_treatmentprotocol =3D "Describe any treatments applied to = the biological material prior to extract preparation. You can include as = much text as you need to thoroughly describe the protocol"=0A= var geowesu_growthprotocol =3D "Describe the conditions that were used = to grow or maintain organisms or cells prior to extract preparation. You = can include as much text as you need to thoroughly describe the protocol"=0A= var geowesu_specmolecule =3D "Specify the type of molecule that was = extracted from the biological material"=0A= var geowesu_extractprotocol =3D "Describe the protocol used to isolate = the extract material. You can include as much text as you need to = thoroughly describe the protocol"=0A= var geowesu_speclabel =3D "Specify the compound used to label the = extract e.g., biotin, Cy3, Cy5, 33P"=0A= var geowesu_labelprotocol =3D "Describe the protocol used to label the = extract. You can include a s much text as you need to thoroughly = describe the protocol"=0A= var geowesu_supplfile =3D "Upload supplementary raw data for this = submission. Most typically this will be the spot intensity files derived = from the images, e.g. Affymetrix CEL files, GenePix GPR files, and = Agilent TXT files. If this Sample has more than one raw file you will = need to package them into a ZIP (or similar) archive file before = uploading. Note that raw data provision is required for MIAME compliance"=0A= var geowesu_plsupplfile =3D "Upload supplementary raw data for this = Platform submission. A supplementary Platform file typically represents = the complete annotation template for a condensed Platform submission, = for example, an Affymetrix .CDF or .PSI file. No expression measurement = data should be included in this file. If you need to upload several = files, you will need to package them into a ZIP (or similar) archive = file before uploading"=0A= var geowesu_listcontribs =3D "List contributors associated with this = study"=0A= =0A= var geosudata_selectpltechnology =3D "Select the category that best = describes the array technology. Contact us at geo@ncbi.nlm.nih.gov for = help with technologies not listed"=0A= var geosudata_supplyplatformdatafile =3D "Supply a plain text = tab-delimited data table that represents the array template. Use the = \'Browse\' button to select the local file to be uploaded. Refer to the = \'Web Deposit Guide\' link above for Platform data table requirements = and guidelines"=0A= var geosudata_selectsmtechnology =3D "Select the anchoring enzyme used = in your SAGE protocol, e.g., NlaIII or Sau3A. Protocol selection in SAGE = libraries replaces platform selection.
A selection is required"=0A= var geosudata_otherprotocol =3D "Specify an alternative anchor enzyme = not listed in the Protocol menu above. Text is required if OTHER was = selected from the menu above"=0A= var geosudata_taglength =3D "Specify the base pair length of the tags = (excluding anchor sequence)"=0A= var geosudata_supplysampledatafile =3D "Supply a plain text = tab-delimited data table that contains quantification data for one = Sample. You can also use a CHP file instead (make sure it has .chp = extension). Use the \'Browse\' button to select the local file to be = uploaded. Refer to the \'Web Deposit Guide\' link above for Sample data = table requirements and guidelines"=0A= var geosudata_datafiletype =3D "
- We request that = processed/normalized data be provided in the VALUE column
- Raw data = can be included in the table upload under additional (non-VALUE) column = headers
- We require that raw data be provided for all submissions. = Although raw data may be included in your uploaded data table here, we = recommend that supplemental raw data files are deposited for all = submissions. Supplemental files may include the image files themselves = (e.g. TIFF or JPG) and/or the quantification results files derived from = the images (e.g. GPR, TXT, CEL). You will be given the opportunity to = upload your supplemental files in a subsequent step