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One More Reason Not to Smoke

Conquest - Spring 2008

By Scott Merville

View video: Christopher Amos, Ph.D., discusses the genetic risk factors associated with lung cancer.


If you smoke, or have ever smoked, read on.

A team led by M. D. Anderson scientists discovered that two commonly inherited genetic variations are associated with an increased risk of lung cancer for smokers and former smokers.

“This is the first study to identify a common genetic variant that influences the risk for developing lung cancer,” says lead author Christopher Amos, Ph.D., professor in M. D. Anderson’s Department of Epidemiology. The variants are present in about one-half of the Caucasian population studied.

The paper, reported in the April 2 online edition of Nature Genetics, is one of three published by Nature this spring from three unique teams that have identified the same genetic location as being associated with increased lung cancer risk. The findings are a major step forward in identifying those at high risk for non-small cell lung cancer and for understanding how smoking and genetic factors interact to cause the disease.

“The major risk factor for developing lung cancer is cigarette smoking,” Amos says. “What we don’t understand is why some long-term smokers develop lung cancer and others don’t. There are so many different cancer-causing compounds in tobacco smoke that it’s hard to separate them, and we don’t fully understand the mechanisms that cause lung cancer.”

While all smokers and former smokers are at higher risk for lung cancer, less than 20% of these “ever smokers” eventually develop the disease. “We need to get a better handle on how genetic factors increase risk and what molecular pathways are involved in development of lung cancer,” Amos says.

Growing body of evidence

The research team, comprising scientists from M. D. Anderson, Johns Hopkins University, and the Institute for Cancer Research and the University of Cambridge in the United Kingdom, pinpointed two spots of genetic variation on chromosome 15.

A team led by Christopher Amos, Ph.D., and Margaret Spitz, M.D., has identified specific genes that increase lung cancer risk and which may explain how smoking and genetic factors interact to cause the disease.

The two variants are single-nucleotide polymorphisms (SNPs, pronounced “snips”), places in the human genome that vary by a single DNA chemical building block or nucleotide. Scientists found that individuals who have ever smoked and who have one or two copies of either of these SNPs have increased risks ranging from 28% to 81% of developing lung cancer.

The team’s findings also might provide support for a growing body of evidence suggesting that nicotine, long known as the prime addictive compound in cigarettes, might also play a direct causative role in the development of lung cancer.

There are five genes in the area of chromosome 15 where the two, risk-raising SNPs were identified, Amos explains. Of those, three are nicotine acetylcholine receptor genes that encode proteins that serve as docking sites to which nicotine can bind.

“Once bound, these receptors set in motion a cascade of signals. Nicotine is known to activate cell proliferation, new blood vessel development and growth factors while up-regulating several signaling pathways. If these are indeed causal genes, that will be of great interest,” Amos says.

Another potential causative gene in the area is one that encodes a component of the proteasome, which degrades other proteins. The function of the fifth gene has yet to be identified.

Further studies with additional SNPs in African-American populations who show different SNP patterns may help to define which of these five genes causes lung cancer. Collaborations with scientists representing both M. D. Anderson’s Lung Specialized Programs of Research Excellence grant and the Robert J. Kleberg, Jr. and Helen C. Kleberg Center for Molecular Markers will evaluate whether these SNPs influence expression of any of these five genes in lung cancers and normal lung tissue, according to Amos.

An exhaustive search

Amos and senior co-author Margaret Spitz, M.D., chair of M. D. Anderson’s Department of Epidemiology, conceived the study, which follows on evidence from epidemiological research indicating a two-fold increase in lung cancer risk for first-degree relatives of lung cancer patients.

With Di Zhang’s help, Xifeng Wu, M.D., Ph.D., (right) and colleagues conducted a series of genome-wide association studies that pinpointed the location of two common genetic variations associated with an increased risk of lung cancer.

To pinpoint genetic variations, the team conducted a series of genome-wide association studies, first genotyping 317,498 different SNPs among 1,154 former and current smokers who developed lung cancer and were seen at M. D. Anderson and 1,137 matched ever-smoker controls in Houston.

This first phase of the study narrowed the search to 10 SNPs, which were then genotyped in 711 additional cases and 632 controls from the same Houston population to identify the final two SNPs. A second replication phase was conducted among 2,013 ever-smoker lung cancer cases and 3,062 controls in the United Kingdom.

To minimize confusion among risk factors and to increase the study’s ability to pinpoint genetic effects, controls were matched to lung cancer cases according to smoking behavior, age and sex. Former smokers were matched by years since they stopped smoking. The study was performed first in Caucasians to minimize the effect of ethnic genetic variation.

The team carefully analyzed its findings to exclude the possibility that the elevated risk from the two SNPs was attributable to their association with heavier smoking. They reported that the study showed a weak effect (of these two SNPs) on smoking behaviors and an extremely significant effect on lung cancer risk, whether or not adjustment for smoking behavior was made during the analysis.

The genetic variations might help identify smokers at higher lung cancer risk who would be the best candidates for screening. And they may be useful to gauge the risk of other smoking-related cancers, such as cancers of the esophagus, bladder, head and neck, and pancreas. A similar genome-wide study of African-American smokers is planned.

Invaluable support

Research was funded principally by the National Cancer Institute (NCI) of the National Institutes of Health (NIH). The Kleberg Center for Molecular Markers, the Flight Attendants Medical Research Institute and the Allan J. Lerner Fund also helped support the study.

Did You Know?

Lung cancer is the leading cause of death among men and women, killing more than 160,000 Americans annually and millions worldwide. Non-small cell lung cancer makes up 85% of all lung cancer cases.

Source: American Cancer Society

Genotyping was conducted by the Center for Inherited Disease Research, which is funded by an NIH contract to Johns Hopkins University, and in the laboratory of Xifeng Wu, M.D., Ph.D., professor in M. D. Anderson’s Department of Epidemiology, as well as at the Institute for Cancer Research in the United Kingdom.

Lung cancer patients and controls for the Texas components of the study came from a 17-year M. D. Anderson lung cancer epidemiological study, which was funded by NCI and led by Spitz.

“We’re very indebted to the patients who’ve participated in the study,” Spitz says. “There’s no immediate benefit to the patients themselves, but they willingly agree to participate in our research and their help has been invaluable. Being able to conduct this analysis should be useful to future generations who develop lung cancer.”

Conquest - Spring 2008

Download pdf version of Spring 2008


One More Reason Not to Smoke 
View video: Christopher Amos, Ph.D., discusses genetic risk factors associated with lung cancer.


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